PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052142-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 84aa    MW: 9522.61 Da    PI: 9.4355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052142-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-111659344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT e  +++ +a + + ++   +W+++a++++ g++++++k ++
  PSME_00052142-RA 16 NWTSEQNKQFEKALAIYDKDradRWHKVASMVP-GKSPEEVKKHY 59
                      7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.051267IPR017884SANT domain
SMARTSM007172.0E-81365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-61569IPR009057Homeodomain-like
PfamPF002496.6E-91659IPR001005SANT/Myb domain
CDDcd001671.07E-81659No hitNo description
SuperFamilySSF466891.35E-131670IPR009057Homeodomain-like
PfamPF014669.9E-54268IPR016072SKP1 component, dimerisation
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASSSRKASY SGSVTNWTSE QNKQFEKALA IYDKDRADRW HKVASMVPGK SPEEVKKHYE  60
ILEEDLNRIE AGKVPFPNYK SSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30884278RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088931.19e-31hypothetical protein L484_018558
SwissprotQ58FS35e-31RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC11e-33D5ADC1_PICSI; Putative uncharacterized protein
STRINGVIT_03s0063g02670.t019e-30(Vitis vinifera)
STRINGPOPTR_0007s13000.17e-30(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-29RAD-like 6